George,
As you have said, there are some who regret installing a 3 blade and others who seem to be content if not pleased with the performance, which indicates to us that this issue is more complex than I've heard it presented.
It would be difficult to imagine Hartzell or any other company designing and STCing a propellor if they believed it was problematic and it's likely the aircraft used for testing may have not shown these issues.
Until I hear an explaination which might explain the varying reports, I can only assume there are many unique variables in play such as engine timing, cylinder and flow balancing, the exhaust system, dynamic balancing and possibly some other suspects such as cowling. and rigging.
It would be interesting to know more information about the planes that experienced these vibrations vs the ones who don't experience this.